OBO Foundry dashboard analysis¶

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/tmp/ipykernel_457/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    3
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 3 4319.000000 6340.101498 2.0 679.5 1357.0 6477.5 11598.0
Declaration 3 833.666667 1102.334946 2.0 208.5 415.0 1249.5 2084.0
EquivalentClasses 3 66.666667 86.742915 1.0 17.5 34.0 99.5 165.0
ObjectPropertyDomain 2 22.666667 37.541089 0.0 1.0 2.0 34.0 66.0
AsymmetricObjectProperty 2 3.000000 3.605551 0.0 1.0 2.0 4.5 7.0
DataPropertyDomain 2 2.333333 2.516611 0.0 1.0 2.0 3.5 5.0
DataPropertyRange 2 2.000000 2.000000 0.0 1.0 2.0 3.0 4.0
DisjointClasses 2 8.333333 13.576941 0.0 0.5 1.0 12.5 24.0
SubObjectPropertyOf 2 76.000000 127.330279 0.0 2.5 5.0 114.0 223.0
SubClassOf 2 794.333333 1038.887065 0.0 206.5 413.0 1191.5 1970.0
ObjectPropertyRange 2 22.000000 36.386811 0.0 1.0 2.0 33.0 64.0
SymmetricObjectProperty 1 1.000000 1.732051 0.0 0.0 0.0 1.5 3.0
SubPropertyChainOf 1 24.333333 42.146570 0.0 0.0 0.0 36.5 73.0
SubAnnotationPropertyOf 1 6.333333 10.969655 0.0 0.0 0.0 9.5 19.0
Rule 1 8.333333 14.433757 0.0 0.0 0.0 12.5 25.0
ReflexiveObjectProperty 1 1.000000 1.732051 0.0 0.0 0.0 1.5 3.0
InverseFunctionalObjectProperty 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
IrrefexiveObjectProperty 1 3.000000 5.196152 0.0 0.0 0.0 4.5 9.0
InverseObjectProperties 1 13.666667 23.671361 0.0 0.0 0.0 20.5 41.0
AnnotationPropertyRangeOf 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
FunctionalObjectProperty 1 1.666667 2.886751 0.0 0.0 0.0 2.5 5.0
FunctionalDataProperty 1 1.333333 2.309401 0.0 0.0 0.0 2.0 4.0
EquivalentObjectProperties 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
DifferentIndividuals 1 0.666667 1.154701 0.0 0.0 0.0 1.0 2.0
ClassAssertion 1 8.666667 15.011107 0.0 0.0 0.0 13.0 26.0
TransitiveObjectProperty 1 6.333333 10.969655 0.0 0.0 0.0 9.5 19.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 3 2661.666667 3490.953642 3.0 685.0 1367.0 3991.0 6615.0
ObjectSomeValuesFrom 3 318.666667 369.386428 1.0 116.0 231.0 477.5 724.0
ObjectAllValuesFrom 2 24.333333 26.764404 0.0 10.0 20.0 36.5 53.0
ObjectComplementOf 2 15.000000 18.734994 0.0 4.5 9.0 22.5 36.0
ObjectExactCardinality 2 3.333333 4.932883 0.0 0.5 1.0 5.0 9.0
ObjectIntersectionOf 2 158.333333 202.124549 0.0 44.5 89.0 237.5 386.0
ObjectMinCardinality 2 2.666667 3.055050 0.0 1.0 2.0 4.0 6.0
ObjectUnionOf 2 13.666667 14.011900 0.0 6.5 13.0 20.5 28.0
DataExactCardinality 1 2.000000 3.464102 0.0 0.0 0.0 3.0 6.0
DataMinCardinality 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
ObjectHasSelf 1 0.333333 0.577350 0.0 0.0 0.0 0.5 1.0
ObjectHasValue 1 2.333333 4.041452 0.0 0.0 0.0 3.5 7.0
ObjectOneOf 1 1.000000 1.732051 0.0 0.0 0.0 1.5 3.0

OBO Score (Experimental)

ontology score score_dash score_impact
1 omrse 0.535 0.838 0.333
0 apollo_sv 0.526 0.816 0.333
2 tmp 0.113 0.282 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 3.0 0.391333 0.241086 0.113 0.3195 0.526 0.5305 0.535
score_dash 3.0 0.645333 0.314848 0.282 0.5490 0.816 0.8270 0.838
score_impact 3.0 0.222000 0.192258 0.000 0.1665 0.333 0.3330 0.333

OBO dependency graph